Background: The somatic nature of mutations in the GNAS
gene in McCune-Albright syndrome and isolated fibrous dysplasia makes their
identification difficult. Conventional methods for the detection of mosaic
mutations of GNAS have required polymerase chain reaction analysis of
genomic DNA from affected tissues or multiple rounds of tandem polymerase
chain reaction and endonuclease digestion to enrich for mutant alleles in
genomic deoxyribonucleic acid (DNA) from other tissues. Peptide nucleic acid
(PNA) primers specifically block synthesis from the nonmutant or wild-type
allele. We therefore used PNA-clamping to detect low copy numbers of mutant
GNAS alleles in DNA from peripheral blood cells from patients with
McCune-Albright syndrome and fibrous dysplasia.
Methods: We applied the PNA-clamping method to the analysis of
genomic DNA from peripheral blood cells of thirteen patients with
McCune-Albright syndrome and three patients with isolated fibrous dysplasia.
Polymerase chain reaction was performed in the presence and absence of PNA,
and the polymerase chain reaction products were sequenced. In the absence of
PNA, a strong 325 base-pair polymerase chain reaction band was generated from
all samples; in the presence of PNA, there was an approximately 50% to 90%
reduction in the intensity of this polymerase chain reaction product.
Results: In the absence of PNA, direct sequencing of the polymerase
chain reaction products demonstrated R201 mutations in GNAS alleles
of three of the thirteen patients with McCune-Albright syndrome and none of
the three patients with fibrous dysplasia. In contrast, in the presence of
PNA, R201 mutations were detected in eleven of the thirteen patients with
McCune-Albright syndrome and in all three of the patients with fibrous
dysplasia. In mixing experiments involving the use of wild-type and mutant DNA
samples, we were able to determine the presence of a mutant GNAS
allele in the equivalent of one cell in 1000 to 5000 cells.
Conclusions: Inclusion of a specific PNA primer in the polymerase
chain reaction for GNAS exon 8 allows the selective amplification of
low numbers of mutant alleles, and it permits detection of activating
mutations in genomic DNA from peripheral blood cells in patients with
McCune-Albright syndrome and fibrous dysplasia.
Level of Evidence: Diagnostic Level I. See Instructions
to Authors for a complete description of levels of evidence.